Supporting Materials for Minkoff et al (Arabidopsis
Protocols)
FDR
This software is used for calculating false discovery
rates from stable isotope metabolic labeling tandem MS
experiments (as published in ). It is written
in Perl and requires the Tk and XML::Twig modules.
Census area script
This software takes census output and compiles an Excel
spreadsheet with summaries and information on peptide IDs from a
15N-based metabolic labeling experiment. It also builds a
histogram of 14N:15N ratios for all peptides identified as
well as unique peptides only. It is written in Perl and
requires the Tk, XML::Twig, GD and Statistics::Descriptive
modules.
Census configuration file
The Census configuration file specific to the protocols
from the book chapter.
Links to software used
External links to various software packages referenced in the
protocols.