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University of Wisconsin–Madison

Bioinformatics Resource Center

Microbiome analysis using QIIME2

2019 dates:

* May 8, 9:00am-4:00pm 

Location: Biotechnology Center, room 1360

LIMITED to 12 participants - (3 minimum)

REGISTER: use Google Calendar link to register on chosen date

Description

This workshop will cover amplicon-based microbiome analysis using the QIIME2. This all-day workshop will consist of lectures and hands on training to analyze from raw dataset through publication-quality statistics and visualizations.

Participants are expected to have a basic knowledge of the Linux environment and a basic understanding of statistical methods.

Prerequisite:

The QIIME2 software will be used via line command method.
Must be comfortable with the Linux command line (bash shell) and familiar with basic Linux commands. 

Bring a WiFi capable laptop.

Set up proper connection software:

  1. Mac: XQuartz. This is semi-optional and for few if any graphics displays. Terminal is already installed on a Mac.
  2. Windows-PC: MobaXterm. Preferably choose the Portable edition over the installed edition for best results.

Optional for files transfer with a GUI:

  1. Cyberduck (cyberduck.io, Mac/PC/Linux); 
  2. Alternative: WinSCP for Windows or the multi-platform version WinSCP crossover Trial-version.

Fee: $175 / seat

Instructor(s):

Sailendharan Sudakaran, Ph.D., Madison Microbiome Hub Manager / Multi Omics Hub Coordinator

Previous instructors:

none - This is a new workshop.

*No-show Policy*

To avoid charges all cancellation need to be notified 72 hours in advance.