Microbiota Analysis in R
dates: Wednesday, October 17, 2018 - 9:00am - 3:30pm
Location: Biotechnology Center, room 1360
LIMITED to 18 participants - (4 minimum)
REGISTER: use Google Calendar link to register on chosen date
Description
The workshop is "Part II" of the microbiota analysis. In "Part I" we processed 16S-derived data and classified reads in operational taxonomic units (OTUs) with the software mothur. We will now take the results and go over the statistical analysis with the software R on a Linux server platform
In this all day workshop with lecture and hands on exercises. Participants are expected to have a
basic knowledge of the Linux environment and a basic understanding of
statistical methods.
Prerequisite:
The R software will be used via line command method.
Must be comfortable with the Linux command line and
familiar with basic Linux commands.
The
Linux Basic for NGS Data Analysis or
DoIT's Linux in a Day free course for UW Students can provide training, or attend the Linux Essentials workshop. However, for this microbiota workshop this is only highly recommended, not required.
* There is a minimal set of software that should be installed on laptops BEFORE attending the workshop. Instructions will be provided to attendees prior to the workshop and can be found within the PDF document: GETTING PREPARED FOR CLASS
Fee: $195 / seat
Instructor(s):
Madison Cox, Graduate student with Prof. Garret Suen, Microbial Sciences
Previous instructor(s):
Kimberly Dill-McFarland, Ph.D., Microbial Sciences
Madison Cox, Graduate student with Prof. Garret Suen, Microbial Sciences
Jean-Yves Sgro, Ph.D., Biotechnology Center
*No-show Policy*
All cancellation need to be notified 72
hours in advance.